Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
ydgHYdgH; Protein YdgH precursor; Similar to Yersinia rohdei ATCC 43380, NAD(P) transhydrogenase subunit alpha (NCBI: ZP_04610857.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Extracellular. (317 aa)    
Predicted Functional Partners:
ydgT
YdgT; H-NS/stpA binding protein 2; Similar to Pantoea sp. At-9b, Hemolysin expression modulating family protein (NCBI: ZP_05727939.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
  
   
 0.894
yjeI
YjeI; Lipoprotein; Similar to Pantoea sp. At-9b, putative lipoprotein (NCBI: ZP_05730842.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.774
yecF
YecF; Conserved Cytoplasmic Protein YecF; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05731298.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.774
holE
HolE; DNA polymerase III theta subunit; Similar to Erwinia pyrifoliae Ep1/96, DNA polymerase III theta subunit (NCBI: YP_002648591.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
     0.774
hha
Hha; Haemolysin expression-modulating protein; Similar to Pantoea sp. At-9b, Hemolysin expression modulating family protein (NCBI: ZP_05727504.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.771
yajG
YajG; Lipoprotein; Similar to Pantoea sp. At-9b, Uncharacterized lipoprotein (NCBI: ZP_05727480.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.770
wecF
WecF; 4-alpha-L-fucosyltransferase; Similar to Pantoea sp. At-9b, 4-alpha-L-fucosyltransferase (NCBI: ZP_05730669.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.767
wzyE
WzyE; Putative ECA polymerase; Similar to Pantoea sp. At-9b, WzyE family protein (NCBI: ZP_05730670.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.767
ompX
OmpX; Outer membrane protein X precursor; Similar to Pantoea sp. At-9b, virulence-related outer membrane protein (NCBI: ZP_05728811.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
  
     0.766
atpI
AtpI; ATP synthase protein I; Similar to Pantoea sp. At-9b, ATP synthase I chain (NCBI: ZP_05729608.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.763
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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