Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ydgIYdgI; Putative arginine/ornithine antiporter; Similar to Pantoea sp. At-9b, protein of unknown function DUF1471 (NCBI: ZP_05729551.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (462 aa)    
Predicted Functional Partners:
argI
ArgI; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
 
  
 0.627
motB
MotB; Chemotaxis protein MotB; Similar to Pantoea sp. At-9b, OmpA/MotB domain protein (NCBI: ZP_05728503.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
      
 0.544
exbB-2
ExbB; Biopolymer transport ExbB protein; Similar to Pantoea sp. At-9b, tonB-system energizer ExbB (NCBI: ZP_05732088.1); COG: Intracellular trafficking, secretion, and vesicular transport; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
      
 0.533
PANA_0646
DUR1,2; Urea amidolyase [Includes: Urea carboxylase]; Similar to Pantoea sp. At-9b, urea carboxylase (NCBI: ZP_05732504.1); COG: Lipid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
   
 
 0.481
mdoH
MdoH; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).
      
 0.457
ydgH
YdgH; Protein YdgH precursor; Similar to Yersinia rohdei ATCC 43380, NAD(P) transhydrogenase subunit alpha (NCBI: ZP_04610857.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Extracellular.
       0.440
amyA
AmyA; Cytoplasmic alpha-amylase; Similar to Erwinia tasmaniensis Et1/99, cytoplasmic alpha-amylase (NCBI: YP_001907359.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
   
 0.440
ycjM
YcjM; Putative sucrose phosphorylase; Similar to Pantoea sp. At-9b, alpha amylase catalytic region (NCBI: ZP_05731111.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Extracellular.
   
 0.440
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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