STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydgIYdgI; Putative arginine/ornithine antiporter; Similar to Pantoea sp. At-9b, protein of unknown function DUF1471 (NCBI: ZP_05729551.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (462 aa)    
Predicted Functional Partners:
amyA
AmyA; Cytoplasmic alpha-amylase; Similar to Erwinia tasmaniensis Et1/99, cytoplasmic alpha-amylase (NCBI: YP_001907359.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
   
 0.604
ycjM
YcjM; Putative sucrose phosphorylase; Similar to Pantoea sp. At-9b, alpha amylase catalytic region (NCBI: ZP_05731111.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Extracellular.
   
 0.604
argI
ArgI; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
 
  
 0.602
trpC
TrpC; Tryptophan biosynthesis protein trpCF [Includes: Indole-3-glycerol phosphate synthase; Similar to Pantoea sp. At-9b, Indole-3-glycerol-phosphate synthase, Phosphoribosylanthranilate isomerase (NCBI: ZP_05729317.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
    
 
 0.478
ydgH
YdgH; Protein YdgH precursor; Similar to Yersinia rohdei ATCC 43380, NAD(P) transhydrogenase subunit alpha (NCBI: ZP_04610857.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Extracellular.
       0.443
gltA
GltA; Glutamate synthase [NADPH] large chain; Similar to Pantoea sp. At-9b, Glutamate synthase (ferredoxin) (NCBI: ZP_05730857.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
  
 0.414
pheA
PheA; P-protein [Includes: Chorismate mutase]; Similar to >sp|Q02286.1|PHEA_ENTAG RecName: Full=P-protein; Includes: RecName: Full=Chorismate mutase; Short=CM; Includes: RecName: Full=Prephenate dehydratase;,PHEA_ENTAG RecName: Full=P-protein; Includes: RecName: Full=Chorismate mutase; Short=CM; Includes: RecName: Full=Prephenate dehydratase;(NCBI: Q02286.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
   
 
 0.408
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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