STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rstB-2RstB; Sensor protein RstB; Similar to Pantoea sp. At-9b, two component transcriptional regulator, winged helix family (NCBI: ZP_05729554.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (433 aa)    
Predicted Functional Partners:
rstA
RstA; Transcriptional regulatory protein RstA; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05729553.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
 0.997
arcB
ArcB; Aerobic respiration control sensor protein ArcB; Similar to Pantoea sp. At-9b, multi-sensor hybrid histidine kinase (NCBI: ZP_05730859.1); COG: Signal transduction mechanism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
0.833
yojN
YojN; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
 
 
 0.761
ydgD
YdgD; Putative protease YdgD precursor; Similar to Pantoea sp. At-9b, peptidase S1 and S6 chymotrypsin/Hap (NCBI: ZP_05729558.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the peptidase S1B family.
  
    0.745
PANA_2001
Hypothetical Protein; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.
       0.733
phoB
PhoB; Phosphate regulon transcriptional regulatory protein PhoB; Similar to Pantoea sp. At-9b, two component transcriptional regulator PhoB, winged helix family (NCBI: ZP_05727440.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
 0.729
baeR-3
BaeR; Transcriptional regulator BaeR; Similar to Enterobacter sakazakii ATCC BAA-894, hypothetical protein ESA_pESA3p05441 (NCBI: YP_001440474.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
 
 0.722
phoP
PhoP; Transcriptional regulatory protein PhoP; Similar to Pantoea sp. At-9b, two component transcriptional regulator, winged helix family (NCBI: ZP_05728420.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
 0.721
baeR
BaeR; Transcriptional regulatory protein BaeR; Similar to Pantoea sp. At-9b, two component transcriptional regulator, winged helix family (NCBI: ZP_05729072.1); COG: Signal transduction mechanism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
 
 0.717
cpxR-2
CpxR; Transcriptional regulatory protein CpxR; Similar to Pantoea sp. At-9b, two component transcriptional regulator, winged helix family (NCBI: ZP_05730357.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
 
 0.711
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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