Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
asrAsr; Required for growth and/or survival at acidic conditions. (165 aa)    
Predicted Functional Partners:
rstB-2
RstB; Sensor protein RstB; Similar to Pantoea sp. At-9b, two component transcriptional regulator, winged helix family (NCBI: ZP_05729554.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
    0.620
psiE
PsiE; Protein PsiE; Similar to Pantoea sp. At-9b, phosphate-starvation-inducible E (NCBI: ZP_05731716.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
      
 0.542
PANA_2001
Hypothetical Protein; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.
       0.536
rstA
RstA; Transcriptional regulatory protein RstA; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05729553.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
     
 0.514
rmf
Rmf; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
   
  
 0.473
eda
Eda; KHG/KDPG aldolase [Includes: 4-hydroxy-2-oxoglutarate aldolase]; Similar to Pantoea sp. At-9b, 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (NCBI: ZP_05728662.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
      
 0.455
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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