Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ydgDYdgD; Putative protease YdgD precursor; Similar to Pantoea sp. At-9b, peptidase S1 and S6 chymotrypsin/Hap (NCBI: ZP_05729558.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the peptidase S1B family. (269 aa)    
Predicted Functional Partners:
yojN
YojN; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
  
    0.752
rstB-2
RstB; Sensor protein RstB; Similar to Pantoea sp. At-9b, two component transcriptional regulator, winged helix family (NCBI: ZP_05729554.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
    0.747
PANA_2801
Inner Membrane Protein; Similar to Erwinia pyrifoliae Ep1/96, hypothetical protein YpfN (NCBI: YP_002648142.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.741
rof
Rof; Protein rof; Similar to Pantoea sp. At-9b, transcriptional antiterminator, Rof (NCBI: ZP_05731583.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
     0.740
ydgA
YdgA; Conserved Protein YdgA; Similar to Pantoea sp. At-9b, protein of unknown function DUF945 (NCBI: ZP_05727959.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.735
ygaC
YgaC; Cytoplasmic Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05727848.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.691
ampE
AmpE; Protein AmpE; Similar to Pantoea sp. At-9b, signaling modulator of AmpD, AmpE (NCBI: ZP_05729804.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.676
aaeX
AaeX; Protein AaeX; Similar to Pantoea sp. At-9b, protein of unknown function DUF1656 (NCBI: ZP_05732139.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.676
yceP
YceP; Cytoplasmic Protein YceP; Similar to Pantoea sp. At-9b, biofilm regulator (NCBI: ZP_05731346.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.674
yhcN-3
YhcN; Outer Membrane Protein; Similar to Pantoea sp. At-9b, protein of unknown function DUF1471 (NCBI: ZP_05732134.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.666
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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