STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PANA_2009Putative lipoprotein; Similar to Pantoea sp. At-9b, putative lipoprotein (NCBI: ZP_05729562.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown. (45 aa)    
Predicted Functional Partners:
ydbL
YdbL; Puative Secreted Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05729561.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
 
  
 0.944
ydbH
YdbH; Periplasmic Protein; Similar to Erwinia tasmaniensis Et1/99, hypothetical protein ETA_16600 (NCBI: YP_001907599.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
 
   
 0.866
ydgK
YdgK; Inner membrane protein YdgK; Similar to Pantoea sp. At-9b, putative inner membrane protein YdgK (NCBI: ZP_05727938.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.760
yhhM
YhhM; Receptor YhhM; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05731784.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.759
wzzE
WzzE; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.732
yejG
YejG; Cytoplasmic Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05730919.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.720
yacC
YacC; Periplasmic Protein YacC; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05729836.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.704
pagC
PagC; Virulence membrane protein PagC precursor; Similar to Edwardsiella tarda EIB202, putative virulence-related membrane protein (NCBI: YP_003295691.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
  
     0.703
yggN
YggN; Periplasmic Protein; Similar to Enterobacter helveticus, Uncharacterized protein yggN (NCBI: CAZ90543.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Extracellular.
  
     0.703
yfbU
YfbU; UPF0304 protein YfbU; Similar to Pantoea sp. At-9b, YfbU family protein (NCBI: ZP_05730578.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the UPF0304 family.
  
     0.676
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.