STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydbHYdbH; Periplasmic Protein; Similar to Erwinia tasmaniensis Et1/99, hypothetical protein ETA_16600 (NCBI: YP_001907599.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown. (877 aa)    
Predicted Functional Partners:
PANA_2009
Putative lipoprotein; Similar to Pantoea sp. At-9b, putative lipoprotein (NCBI: ZP_05729562.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
 
   
 0.866
ydbL
YdbL; Puative Secreted Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05729561.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
 
   
 0.809
ytfM
YtfM; Outer Membrane Protein; Similar to Pantoea sp. At-9b, surface antigen (D15) (NCBI: ZP_05730773.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
  
 
 0.805
rof
Rof; Protein rof; Similar to Pantoea sp. At-9b, transcriptional antiterminator, Rof (NCBI: ZP_05731583.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
     0.772
yojN
YojN; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
 
    0.770
yidQ
YidQ; Lipoprotein; Similar to Pantoea sp. At-9b, protein of unknown function DUF1375 (NCBI: ZP_05729645.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
   
 0.766
yacC
YacC; Periplasmic Protein YacC; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05729836.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.765
ycdY
YcdY; Dimethyl Sulfoxide Reductase Component Protein YcdY; Similar to Pantoea sp. At-9b, cytoplasmic chaperone TorD family protein (NCBI: ZP_05728462.1); COG: Coenzyme transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.760
ydgA
YdgA; Conserved Protein YdgA; Similar to Pantoea sp. At-9b, protein of unknown function DUF945 (NCBI: ZP_05727959.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.759
yniB
YniB; YfeABCD Locus Regulatory Protein YniB; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05728544.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.756
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.