Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yhiD-2YhiD; MgtC Family Protein; Similar to Yersinia ruckeri ATCC 29473, hypothetical protein yruck0001_13070 (NCBI: ZP_04614941.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (218 aa)    
Predicted Functional Partners:
mgtB
MgtB; Magnesium transporting ATPase, P-type 1; Similar to Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, hypothetical protein SARI_03870 (NCBI: YP_001572806.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.620
ydbJ
YdbJ; Lipoprotein; Similar to Pantoea sp. At-9b, protein of unknown function DUF333 (NCBI: ZP_05729566.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.510
yhgE
YhgE; Transport; Similar to Escherichia coli UMN026, conserved hypothetical protein; putative inner membrane protein (NCBI: YP_002414511.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
 
 0.417
yeaY
YeaY; Outer Membrane Protein; Similar to Pantoea sp. At-9b, outer membrane lipoprotein, Slp family (NCBI: ZP_05728595.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
   
  
 0.406
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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