STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaN-2YdaN; Inner membrane protein YdaN; Similar to Pantoea sp. At-9b, Mg2 transporter protein CorA family protein (NCBI: ZP_05729575.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (327 aa)    
Predicted Functional Partners:
cre
Cre; Recombinase Cre; Similar to Pantoea sp. At-9b, integrase family protein (NCBI: ZP_05731479.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the 'phage' integrase family.
     
 0.767
mppA
MppA; Periplasmic murein peptide-binding protein precursor; Similar to Pantoea sp. At-9b, extracellular solute-binding protein family 5 (NCBI: ZP_05729576.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
       0.507
copA
CopA; Copper-transporting P-type ATPase; Similar to Pantoea sp. At-9b, copper-translocating P-type ATPase (NCBI: ZP_05727537.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
   
 0.477
mukB
MukB; Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division; Belongs to the SMC family. MukB subfamily.
  
     0.474
rimK
RimK; Ribosomal protein S6 modification protein; Similar to Pantoea sp. At-9b, alpha-L-glutamate ligase, RimK family (NCBI: ZP_05728846.1); COG: Translation, ribosomal structure and biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the RimK family.
 
     0.404
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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