STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mppAMppA; Periplasmic murein peptide-binding protein precursor; Similar to Pantoea sp. At-9b, extracellular solute-binding protein family 5 (NCBI: ZP_05729576.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic. (541 aa)    
Predicted Functional Partners:
oppB
OppB; Oligopeptide transport system permease protein OppB; Similar to Pantoea sp. At-9b, Alkaline phosphatase (NCBI: ZP_05729402.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.983
oppC
OppC; Oligopeptide transport system permease protein OppC; Similar to Pantoea sp. At-9b, binding-protein-dependent transport systems inner membrane component (NCBI: ZP_05729401.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.981
oppF
OppF; Oligopeptide transport ATP-binding protein OppF; Similar to Pantoea sp. At-9b, oligopeptide/dipeptide ABC transporter, ATPase subunit (NCBI: ZP_05729399.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
 
 
 0.979
oppD
OppD; Oligopeptide transport ATP-binding protein OppD; Similar to Pantoea sp. At-9b, oligopeptide/dipeptide ABC transporter, ATPase subunit (NCBI: ZP_05729400.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.977
oppA
OppA; Periplasmic oligopeptide-binding protein precursor; Similar to Burkholderia pseudomallei B7210, ABC antibiotic efflux pump, membrane fusion protein, HlyD subfamily (NCBI: ZP_02477036.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
  
  
 
0.907
oppA-2
OppA; Periplasmic oligopeptide-binding protein precursor; Similar to Pantoea sp. At-9b, extracellular solute-binding protein family 5 (NCBI: ZP_05729403.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
  
  
 
0.905
dppF
DppF; Dipeptide transport ATP-binding protein DppF; Similar to Pantoea sp. At-9b, oligopeptide/dipeptide ABC transporter, ATPase subunit (NCBI: ZP_05732366.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
  
 0.570
ycjI
YcjI; Carboxypeptidase; Similar to Pantoea sp. At-9b, peptidase M14 carboxypeptidase A (NCBI: ZP_05729577.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
  
 0.555
dppB
DppB; Dipeptide transport system permease protein DppB; Similar to Pantoea sp. At-9b, Alkaline phosphatase (NCBI: ZP_05732363.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
 0.541
yliC
YliC; Inner membrane ABC transporter permease protein YliC; Similar to Pantoea sp. At-9b, binding-protein-dependent transport systems inner membrane component (NCBI: ZP_05728828.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
 0.537
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.