STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjIYcjI; Carboxypeptidase; Similar to Pantoea sp. At-9b, peptidase M14 carboxypeptidase A (NCBI: ZP_05729577.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (243 aa)    
Predicted Functional Partners:
ygaC
YgaC; Cytoplasmic Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05727848.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.647
ydiV-2
YdiV; Hypothetical protein YdiV; Similar to Pantoea sp. At-9b, diguanylate phosphodiesterase (NCBI: ZP_05728560.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.609
yiaH
YiaH; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
  
     0.596
rcsF
RcsF; Protein rcsF; Similar to Pantoea sp. At-9b, regulator in colanic acid synthesis (NCBI: ZP_05731588.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
  
     0.563
mtlR
MtlR; Hypothetical Protein MtlR; Similar to Enterobacter sp. 638, mannitol repressor protein (NCBI: YP_001174875.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.557
mppA
MppA; Periplasmic murein peptide-binding protein precursor; Similar to Pantoea sp. At-9b, extracellular solute-binding protein family 5 (NCBI: ZP_05729576.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
  
  
 0.555
ybjP
YbjP; Putative lipoprotein YbjP precursor; Similar to Pantoea sp. At-9b, putative lipoprotein YbjP (NCBI: ZP_05728859.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.550
yccR
YccR; Regulator Of Competence-Specific Genes; Similar to Pantoea sp. At-9b, regulator of competence-specific genes protein (NCBI: ZP_05728929.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.538
yiaF
YiaF; Lipoprotein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05729719.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.526
ypfG
YpfG; Hypothetical protein YpfG precursor; Similar to Pantoea sp. At-9b, protein of unknown function DUF1176 (NCBI: ZP_05727683.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.521
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.