STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjGYcjG; Chloromuconate Cycloisomerase; Similar to Pantoea sp. At-9b, Mandelate racemase/muconate lactonizing protein (NCBI: ZP_05729578.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown. (327 aa)    
Predicted Functional Partners:
PANA_4040
Similar to Pantoea sp. At-9b, protein of unknown function DUF1611 (NCBI: ZP_05732525.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
 
  
  0.977
ycjG-2
YcjG; Mandelate Racemase/Muconate Lactonizing Family Protein; Similar to Pantoea sp. At-9b, Mandelate racemase/muconate lactonizing protein (NCBI: ZP_05732524.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown.
  
  
 
0.906
tpx
Tpx; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily.
       0.580
PANA_0315
Hypothetical Protein; N-Acetylglucosamine Kinase; Similar to Pantoea sp. At-9b, ATPase BadF/BadG/BcrA/BcrD type (NCBI: ZP_05732334.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
 
    0.400
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.