STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PANA_2020Hypothetical Protein; Similar to Corynebacterium efficiens YS-314, putative transport protein (NCBI: NP_737750.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown. (92 aa)    
Predicted Functional Partners:
tyrR
TyrR; Transcriptional regulatory protein TyrR; Similar to >sp|Q9ZIB7.1|TYRR_ENTAG RecName: Full=Transcriptional regulatory protein tyr,TYRR_ENTAG RecName: Full=Transcriptional regulatory protein tyr(NCBI: Q9ZIB7.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
       0.773
ycjF
YcjF; UPF0283 membrane protein YcjF; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05729582.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.510
ycjX
YcjX; ATPase; Similar to Salmonella enterica subsp. enterica serovar Heidelberg str. SL486, YcjX (NCBI: ZP_02666181.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.510
pspD
PspD; Phage shock protein D; Similar to Pantoea sp. At-9b, phage shock protein PspD (NCBI: ZP_05729584.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.510
pspC
PspC; Phage shock protein C; Similar to Pantoea sp. At-9b, phage shock protein C, PspC (NCBI: ZP_05729585.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.510
pspB
PspB; Phage shock protein B; Similar to Pantoea sp. At-9b, phage shock protein B (NCBI: ZP_05729586.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.510
pspA
PspA; Phage shock protein A; Similar to Pantoea sp. At-9b, phage shock protein A, PspA (NCBI: ZP_05729587.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.440
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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