STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sapFSapF; Peptide transport system ATP-binding protein SapF; Similar to Pantoea sp. At-9b, ABC transporter related protein (NCBI: ZP_05729281.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (272 aa)    
Predicted Functional Partners:
sapC
SapC; Peptide transport system permease protein SapC; Similar to Pantoea sp. At-9b, binding-protein-dependent transport systems inner membrane component (NCBI: ZP_05729279.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.995
sapB
SapB; Peptide transport system permease protein SapB; Similar to Pantoea sp. At-9b, binding-protein-dependent transport systems inner membrane component (NCBI: ZP_05729278.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
 0.957
sapD
SapD; Peptide transport system ATP-binding protein SapD; Similar to Pantoea sp. At-9b, oligopeptide/dipeptide ABC transporter, ATPase subunit (NCBI: ZP_05729280.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
  
0.950
yliD-2
YliD; ABC Transporter Permease Protein YliD; Similar to Pantoea sp. At-9b, binding-protein-dependent transport systems inner membrane component (NCBI: ZP_05732489.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
     0.852
sapA
SapA; Peptide transport periplasmic protein SapA precursor; Similar to Pantoea sp. At-9b, extracellular solute-binding protein family 5 (NCBI: ZP_05729277.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
 
  
 0.841
yddQ
YddQ; Inner membrane ABC transporter permease protein YddQ; Similar to Pantoea sp. At-9b, binding-protein-dependent transport systems inner membrane component (NCBI: ZP_05727838.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
     0.832
yliD
YliD; Oligopeptide ABC Transporter Permease Protein; Similar to Pantoea sp. At-9b, binding-protein-dependent transport systems inner membrane component (NCBI: ZP_05728829.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
     0.770
yddQ-2
YddQ; Inner membrane ABC transporter permease protein yddQ; Similar to Escherichia coli SMS-3-5, inner membrane ABC transporter permease protein yddQ (NCBI: YP_001743742.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
     0.755
dppC
DppC; Dipeptide transport system permease protein DppC; Similar to Erwinia tasmaniensis Et1/99, dipeptide transporter (NCBI: YP_001909303.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
     0.735
yliC-3
YliC; Inner membrane ABC transporter permease protein YliC; Similar to Pantoea sp. At-9b, binding-protein-dependent transport systems inner membrane component (NCBI: ZP_05732490.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
     0.702
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.