STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hns-2Hns; DNA-binding protein H-NS; Similar to Pantoea sp. At-9b, histone family protein nucleoid-structuring protein H-NS (NCBI: ZP_05729408.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (161 aa)    
Predicted Functional Partners:
hha
Hha; Haemolysin expression-modulating protein; Similar to Pantoea sp. At-9b, Hemolysin expression modulating family protein (NCBI: ZP_05727504.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
  
 
 0.846
lpp
Lpp; Major outer membrane lipoprotein precursor; Similar to Klebsiella pneumoniae 342, major outer membrane lipoprotein (NCBI: YP_002238023.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
  
    0.781
yhcB
YhcB; Putative cytochrome d ubiquinol oxidase subunit III; Similar to Pantoea sp. At-9b, protein of unknown function DUF1043 (NCBI: ZP_05730850.1); COG: Translation, ribosomal structure and biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.684
yiiU
YiiU; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.
  
    0.666
ydgT
YdgT; H-NS/stpA binding protein 2; Similar to Pantoea sp. At-9b, Hemolysin expression modulating family protein (NCBI: ZP_05727939.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
  
 
 
 0.661
yaeH
YaeH; Chromosome Segregation ATPase; Similar to Serratia odorifera 4Rx13, hypothetical protein SOD_j00380 (NCBI: ZP_06193088.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the UPF0325 family.
  
    0.656
ompF-3
OmpF; Outer membrane protein F precursor; Similar to Yersinia pseudotuberculosis YPIII, porin (NCBI: YP_001721379.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
  
    0.640
yrbK
YrbK; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
  
     0.619
ompC-2
OmpC; Outer membrane protein C precursor; Similar to Klebsiella pneumoniae 342, outer membrane protein C (NCBI: YP_002237369.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
  
    0.618
yajG
YajG; Lipoprotein; Similar to Pantoea sp. At-9b, Uncharacterized lipoprotein (NCBI: ZP_05727480.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.613
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.