STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yebQ-2YebQ; Drug Resistance Transporter EmrB/QacA Family; Similar to Pantoea sp. At-9b, major facilitator superfamily MFS_1 (NCBI: ZP_05728615.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (453 aa)    
Predicted Functional Partners:
emrB-2
EmrB; Multidrug resistance protein B homolog; Similar to Pantoea sp. At-9b, major facilitator superfamily MFS_1 (NCBI: ZP_05727635.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.591
emrD
EmrD; Multidrug resistance protein D; Similar to Pantoea sp. At-9b, major facilitator superfamily MFS_1 (NCBI: ZP_05730348.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
   
 0.561
cmlA
CmlA; Chloramphenicol resistance protein; Similar to Erwinia tasmaniensis Et1/99, Putative multidrug resistance proteins (NCBI: YP_001907485.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
   
 0.552
emrA
EmrA; Multidrug resistance protein A; Similar to Erwinia pyrifoliae Ep1/96, Putative multidrug resistance protein K (NCBI: YP_002649331.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.545
ydhC
YdhC; Inner membrane transport protein YdhC; Similar to Pantoea sp. At-9b, drug resistance transporter, Bcr/CflA subfamily (NCBI: ZP_05727873.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
  
 0.544
emrA-3
EmrA; Multidrug resistance protein A; Similar to Pantoea sp. At-9b, secretion protein HlyD family protein (NCBI: ZP_05727636.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.543
emrA-4
EmrA; Multidrug resistance protein A; Similar to Pantoea sp. At-9b, efflux pump membrane protein (NCBI: ZP_05727860.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.527
emrA-2
EmrA; Multidrug resistance protein A; Similar to Pantoea sp. At-9b, secretion protein HlyD family protein (NCBI: ZP_05731327.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.514
kdgR-2
KdgR; Pectin degradation repressor protein KdgR; Similar to Pantoea sp. At-9b, transcriptional regulator, IclR family (NCBI: ZP_05728614.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.504
ydhJ
YdhJ; HlyD Family Secretion Protein; Similar to Pantoea sp. At-9b, secretion protein HlyD family protein (NCBI: ZP_05727888.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.428
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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