STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yebTYebT; Paraquat-Inducible Protein B; Similar to Pantoea sp. At-9b, Mammalian cell entry related domain protein (NCBI: ZP_05728621.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown. (891 aa)    
Predicted Functional Partners:
yebS
YebS; Inner membrane protein YebS; Similar to Pantoea sp. At-9b, integral membrane protein, PqiA family (NCBI: ZP_05728620.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
 0.978
pqiA
PqiA; Paraquat-inducible protein A; Similar to Pantoea sp. At-9b, integral membrane protein, PqiA family (NCBI: ZP_05728921.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
  
 0.746
yebU
YebU; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
       0.704
yicH
YicH; Exported Protein; Similar to Pantoea sp. At-9b, AsmA family protein (NCBI: ZP_05730411.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.564
ygaC
YgaC; Cytoplasmic Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05727848.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.553
rcsF
RcsF; Protein rcsF; Similar to Pantoea sp. At-9b, regulator in colanic acid synthesis (NCBI: ZP_05731588.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
  
     0.551
yebR
YebR; UPF0067 protein YebR; Similar to Pantoea sp. At-9b, putative GAF sensor protein (NCBI: ZP_05728619.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Unknown.
   
   0.543
ygfB
YgfB; Hypothetical UPF0149 protein YgfB; Similar to Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601, hypothetical protein SSPA2729 (NCBI: YP_002143571.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
 
     0.538
yrfG
YrfG; Phosphatase; Similar to Pantoea sp. At-9b, HAD-superfamily hydrolase, subfamily IA, variant 3 (NCBI: ZP_05731102.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.517
mltB
MltB; Membrane-bound lytic murein transglycosylase B precursor; Similar to Pantoea sp. At-9b, lytic murein transglycosylase B (NCBI: ZP_05731679.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.506
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.