Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ycaD-2YcaD; MFS-type transporter protein YPO1380/y2792.1/YP1213; Similar to Pantoea sp. At-9b, major facilitator superfamily MFS_1 (NCBI: ZP_05731522.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (455 aa)    
Predicted Functional Partners:
yaaA
YaaA; Hypothetical UPF0246 protein YPO0462/y3714/YP3720; Similar to Pantoea sp. At-9b, protein of unknown function DUF328 (NCBI: ZP_05729732.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
    0.683
PANA_2163
Similar to Dickeya zeae Ech1591, protein of unknown function DUF1272 (NCBI: YP_003005084.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.532
betT
BetT; High-affinity choline transport protein; Similar to Enterobacter sakazakii ATCC BAA-894, choline transport protein BetT (NCBI: YP_001438133.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane; Belongs to the BCCT transporter (TC 2.A.15) family.
       0.523
PANA_2362
Putative exported protein; Similar to Pectobacterium atrosepticum SCRI1043, hypothetical protein ECA2175 (NCBI: YP_050270.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.407
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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