Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
yebEYebE; Inner membrane protein YebE; Similar to Pantoea sp. At-9b, protein of unknown function DUF533 (NCBI: ZP_05728660.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (216 aa)    
Predicted Functional Partners:
spy
Spy; Spheroplast protein Y precursor; Similar to Pantoea sp. At-9b, protein of unknown function Spy-related (NCBI: ZP_05728529.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Periplasmic.
  
  
 0.913
cpxP
CpxP; Periplasmic protein CpxP precursor; Similar to Pantoea sp. At-9b, periplasmic repressor of cpx regulon by interaction with CpxA (NCBI: ZP_05730356.1); COG: Intracellular trafficking, secretion, and vesicular transport; Subcellular localization as predicted by Psort 2.0: Periplasmic.
  
  
 0.902
ptrB
PtrB; Protease II; Similar to Pantoea sp. At-9b, Oligopeptidase B (NCBI: ZP_05728659.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
       0.793
yieE
YieE; Cytoplasmic Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05729627.1); COG: Coenzyme transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.673
yciW
YciW; Oxidoreductase; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05729283.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.651
sdaA
SdaA; L-serine dehydratase 1; Similar to Pantoea sp. At-9b, L-serine dehydratase 1 (NCBI: ZP_05728602.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the iron-sulfur dependent L-serine dehydratase family.
   
    0.642
htpX
HtpX; Probable protease HtpX homolog; Similar to Pantoea sp. At-9b, HtpX domain protein (NCBI: ZP_05728616.1); COG: Posttranslational modification, protein turnover, chaperones; Subcellular localization as predicted by Psort 2.0: Inner Membrane; Belongs to the peptidase M48B family.
   
    0.627
ypfG
YpfG; Hypothetical protein YpfG precursor; Similar to Pantoea sp. At-9b, protein of unknown function DUF1176 (NCBI: ZP_05727683.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.603
ymcC
YmcC; Regulator; Similar to Pantoea sp. At-9b, putative lipoprotein YmcC (NCBI: ZP_05731766.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown.
  
   
 0.597
yobD
YobD; UPF0266 membrane protein YobD; Similar to Pantoea sp. At-9b, protein of unknown function DUF986 (NCBI: ZP_05728608.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.564
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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