STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yeeAYeeA; Inner membrane protein YeeA; Similar to Pantoea sp. At-9b, putative inner membrane protein YeeA (NCBI: ZP_05729009.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (365 aa)    
Predicted Functional Partners:
PANA_2801
Inner Membrane Protein; Similar to Erwinia pyrifoliae Ep1/96, hypothetical protein YpfN (NCBI: YP_002648142.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.755
ampE
AmpE; Protein AmpE; Similar to Pantoea sp. At-9b, signaling modulator of AmpD, AmpE (NCBI: ZP_05729804.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.754
ygaC
YgaC; Cytoplasmic Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05727848.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.742
yhfK
YhfK; Integral Membrane Protein; Similar to Pantoea sp. At-9b, integral membrane protein, YccS/YhfK family (NCBI: ZP_05731075.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
     0.738
yceP
YceP; Cytoplasmic Protein YceP; Similar to Pantoea sp. At-9b, biofilm regulator (NCBI: ZP_05731346.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.736
aaeX
AaeX; Protein AaeX; Similar to Pantoea sp. At-9b, protein of unknown function DUF1656 (NCBI: ZP_05732139.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
    0.730
tsgA
TsgA; Protein TsgA homolog; Similar to Pantoea sp. At-9b, major facilitator superfamily MFS_1 (NCBI: ZP_05731081.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.726
ybjX
YbjX; VirK Protein; Similar to Pantoea sp. At-9b, protein of unknown function DUF535 (NCBI: ZP_05729714.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.702
ynfB
YnfB; Secreted Protein YnfB; Similar to Pantoea sp. At-9b, protein of unknown function DUF1283 (NCBI: ZP_05729503.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the UPF0482 family.
  
     0.701
yceB
YceB; Putative lipoprotein YceB precursor; Similar to Pantoea sp. At-9b, protein of unknown function DUF1439 (NCBI: ZP_05731350.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.697
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.