STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcaAWcaA; Putative glycosyl transferase HI0868; Similar to Pantoea stewartii subsp. stewartii, CpsF (NCBI: ACO05916.1); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown. (252 aa)    
Predicted Functional Partners:
amsD
AmsD; Amylovoran biosynthesis glycosyl transferase AmsD; Similar to Pantoea stewartii subsp. stewartii, CpsG (NCBI: ACO05917.1); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown.
 
 
 0.901
amsL
AmsL; Amylovoran biosynthesis protein amsL; Similar to Pantoea sp. At-9b, polysaccharide biosynthesis protein (NCBI: ZP_05729047.1); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
  
 0.772
amsG-2
AmsG; UDP-galactose-lipid carrier transferase; Similar to Pantoea stewartii subsp. stewartii, CpsA (NCBI: AAC27321.2); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
  
 0.717
amsB
AmsB; Amylovoran biosynthesis glycosyl transferase AmsB; Similar to Pantoea stewartii subsp. stewartii, CpsE (NCBI: ACO05915.1); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
    
0.688
amsA
AmsA; Putative tyrosine-protein kinase AmsA; Similar to Pantoea stewartii subsp. stewartii, CpsC (NCBI: ACO05913.1); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
  
 0.573
amsC
AmsC; Amylovoran biosynthesis protein AmsC; Similar to Pantoea stewartii subsp. stewartii, CpsD (NCBI: ACO05914.1); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
  
 0.538
amsK
AmsK; Amylovoran biosynthesis glycosyl transferase AmsK; Similar to Pantoea stewartii subsp. stewartii, CpsK (NCBI: ACO05920.1); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown.
 
 
 0.526
PANA_2872
Hypothetical Protein; Similar to Pseudomonas syringae pv. syringae B728a, hypothetical protein Psyr_2699 (NCBI: YP_235776.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
   
 0.500
amsF-2
AmsF; Amylovoran biosynthesis protein AmsF precursor; Similar to Pantoea stewartii subsp. stewartii, CpsH (NCBI: ACO05918.1); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.477
PANA_0934
Inner Membrane Protein; Similar to Pantoea sp. At-9b, Abortive infection protein (NCBI: ZP_05727406.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
     0.473
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.