Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
bcr-2Bcr; Bicyclomycin resistance protein; Similar to Pantoea sp. At-9b, drug resistance transporter, Bcr/CflA subfamily (NCBI: ZP_05730921.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (398 aa)    
Predicted Functional Partners:
rsuA
RsuA; Ribosomal small subunit pseudouridine synthase A; Similar to Cronobacter turicensis, Ribosomal small subunit pseudouridine synthase A (NCBI: YP_003211213.1); COG: Translation, ribosomal structure and biogenesis; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the pseudouridine synthase RsuA family.
       0.817
nlpB
NlpB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
      
 0.803
ydeD
YdeD; Permease; Similar to Burkholderia cenocepacia AU 1054, hypothetical protein Bcen_5197 (NCBI: YP_625044.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
      
 0.774
yejH
YejH; Helicase; Similar to Pantoea sp. At-9b, type III restriction protein res subunit (NCBI: ZP_05730923.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.561
rhtB
RhtB; Homoserine/homoserine lactone efflux protein; Similar to Erwinia tasmaniensis Et1/99, homoserine/homoserine lactone efflux protein (NCBI: YP_001906178.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
   
 0.444
yejG
YejG; Cytoplasmic Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05730919.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.440
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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