STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttgVTtgV; HTH-type transcriptional regulator TtgV; Similar to Pantoea sp. At-9b, transcriptional regulator, IclR family (NCBI: ZP_05727633.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown. (261 aa)    
Predicted Functional Partners:
PANA_2735
Universal Stress Protein Family; Similar to Pantoea sp. At-9b, UspA domain protein (NCBI: ZP_05727632.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Unknown.
     0.941
PANA_2734
Hypothetical Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05727631.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
      0.905
PANA_0646
DUR1,2; Urea amidolyase [Includes: Urea carboxylase]; Similar to Pantoea sp. At-9b, urea carboxylase (NCBI: ZP_05732504.1); COG: Lipid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
    0.827
PANA_4072
DUR1,2; Urea amidolyase [Includes: Urea carboxylase]; Similar to Klebsiella variicola At-22, urea carboxylase (NCBI: ZP_06164364.1); COG: Lipid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
    0.824
yagI
YagI; Putative HTH-type transcriptional regulator YagI; Similar to Klebsiella pneumoniae 342, transcriptional regulator, IclR family (NCBI: YP_002236946.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.706
emrB-2
EmrB; Multidrug resistance protein B homolog; Similar to Pantoea sp. At-9b, major facilitator superfamily MFS_1 (NCBI: ZP_05727635.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
     0.672
emrA-3
EmrA; Multidrug resistance protein A; Similar to Pantoea sp. At-9b, secretion protein HlyD family protein (NCBI: ZP_05727636.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
     0.636
ydfH
YdfH; Putative HTH-type transcriptional regulator YdfH; Similar to Pantoea sp. At-9b, transcriptional regulator, GntR family (NCBI: ZP_05729078.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Unknown.
  
    0.574
kipR
KipR; HTH-type transcriptional regulator KipR; Similar to Pantoea sp. At-9b, transcriptional regulator, IclR family (NCBI: ZP_05726911.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.558
ycbG
YcbG; Transcriptional Regulator GntR Family; Similar to Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537, putative GntR domain protein (NCBI: ZP_02831412.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
  
  
 0.423
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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