STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypfHYpfH; Esterase YpfH; Similar to Pantoea sp. At-9b, phospholipase/Carboxylesterase (NCBI: ZP_05727703.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown. (226 aa)    
Predicted Functional Partners:
ygaC
YgaC; Cytoplasmic Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05727848.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.676
rcsF
RcsF; Protein rcsF; Similar to Pantoea sp. At-9b, regulator in colanic acid synthesis (NCBI: ZP_05731588.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
  
     0.654
ypfI
YpfI; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
 
     0.645
ypfJ
YpfJ; Metalloprotease; Similar to Pantoea sp. At-9b, protein of unknown function zinc metallopeptidase putative (NCBI: ZP_05727705.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.595
hnr
Hnr; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation.
  
     0.594
lamB
LamB; Maltoporin precursor; Similar to Citrobacter sp. 30_2, conserved hypothetical protein (NCBI: ZP_04559467.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
  
     0.591
yiaF
YiaF; Lipoprotein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05729719.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.573
yafA
YafA; Esterase YafA; Similar to Pantoea sp. At-9b, protein of unknown function DUF1100 hydrolase family protein (NCBI: ZP_05727365.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the UPF0255 family.
     
 0.560
nlpB
NlpB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.545
yhdP
YhdP; Exported Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05732142.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.533
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.