STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PANA_2811Similar to Pantoea sp. At-9b, protein of unknown function DUF1680 (NCBI: ZP_05730930.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown. (659 aa)    
Predicted Functional Partners:
yisR
YisR; Putative HTH-type transcriptional regulator YisR; Similar to Pantoea sp. At-9b, transcriptional regulator, AraC family (NCBI: ZP_05730932.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
     0.825
abfA
AbfA; Alpha-N-arabinofuranosidase; Similar to Enterobacter sakazakii ATCC BAA-894, hypothetical protein ESA_01942 (NCBI: YP_001438032.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
   
 0.811
yicJ-3
YicJ; Inner membrane symporter YicJ; Similar to Pantoea sp. At-9b, sugar (Glycoside-Pentoside-Hexuronide) transporter (NCBI: ZP_05730931.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.782
PANA_0739
Hypothetical Protein; Alpha-N-arabinofuranosidase II precursor; Similar to Pantoea sp. At-9b, Alpha-N-arabinofuranosidase (NCBI: ZP_05729805.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the glycosyl hydrolase 43 family.
 
     0.693
araA
AraA; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.635
PANA_2813
Hypothetical Protein; Similar to Roseobacter denitrificans OCh 114, ATP-dependent DNA helicase (NCBI: YP_683709.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.569
bglX-2
BglX; Periplasmic beta-glucosidase precursor; Similar to Cronobacter turicensis, hypothetical protein Ctu_18660 (NCBI: YP_003210229.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Periplasmic.
  
     0.532
rspA
RspA; Has low D-gluconate dehydratase activity (in vitro), suggesting that it has no significant role in D-gluconate degradation in vivo. Has no detectable activity with a panel of 70 other acid sugars (in vitro); Belongs to the mandelate racemase/muconate lactonizing enzyme family. GalD subfamily.
 
     0.483
cex
Cex; Exoglucanase/xylanase precursor; Similar to Pseudomonas syringae pv. tabaci ATCC 11528, glycosy hydrolase family protein (NCBI: ZP_05637275.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
 
   
 0.469
rhaB
RhaB; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family.
  
     0.437
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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