STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yicJ-3YicJ; Inner membrane symporter YicJ; Similar to Pantoea sp. At-9b, sugar (Glycoside-Pentoside-Hexuronide) transporter (NCBI: ZP_05730931.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (466 aa)    
Predicted Functional Partners:
PANA_2811
Similar to Pantoea sp. At-9b, protein of unknown function DUF1680 (NCBI: ZP_05730930.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.782
yisR
YisR; Putative HTH-type transcriptional regulator YisR; Similar to Pantoea sp. At-9b, transcriptional regulator, AraC family (NCBI: ZP_05730932.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
     0.617
PANA_2813
Hypothetical Protein; Similar to Roseobacter denitrificans OCh 114, ATP-dependent DNA helicase (NCBI: YP_683709.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.569
perM
PerM; Putative permease PerM; Similar to Pantoea sp. At-9b, protein of unknown function UPF0118 (NCBI: ZP_05727711.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.425
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.