STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxCTrxC; Thioredoxin 2; Similar to Pantoea sp. At-9b, thioredoxin (NCBI: ZP_05727863.1); COG: Posttranslational modification, protein turnover, chaperones; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the thioredoxin family. (139 aa)    
Predicted Functional Partners:
trxB
TrxB; Thioredoxin reductase; Similar to Pantoea sp. At-9b, thioredoxin reductase (NCBI: ZP_05728872.1); COG: Posttranslational modification, protein turnover, chaperones; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
 0.813
putA
PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
    
 
 0.676
amsI
AmsI; Probable low molecular weight protein-tyrosine-phosphatase AmsI; Similar to Pantoea stewartii subsp. stewartii, CpsI (NCBI: ACO05912.1); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
 
 0.586
yfiP
YfiP; Hypothetical protein YfiP; Similar to Pantoea sp. At-9b, DTW domain containing protein (NCBI: ZP_05727864.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.557
yfiF
YfiF; tRNA/rRNA Methyltransferase; Similar to Pantoea sp. At-9b, tRNA/rRNA methyltransferase (SpoU) (NCBI: ZP_05727862.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.537
grpE
GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interacti [...]
 
  
 0.512
yfiQ
YfiQ; Acetyl-CoA Synthetase; Similar to Pantoea sp. At-9b, GCN5-related N-acetyltransferase (NCBI: ZP_05727866.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Unknown.
 
     0.508
fusA
FusA; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
    
 
 0.499
gltA
GltA; Glutamate synthase [NADPH] large chain; Similar to Pantoea sp. At-9b, Glutamate synthase (ferredoxin) (NCBI: ZP_05730857.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
   
 
 0.498
copA
CopA; Copper-transporting P-type ATPase; Similar to Pantoea sp. At-9b, copper-translocating P-type ATPase (NCBI: ZP_05727537.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
  
 0.461
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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