STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxCTrxC; Thioredoxin 2; Similar to Pantoea sp. At-9b, thioredoxin (NCBI: ZP_05727863.1); COG: Posttranslational modification, protein turnover, chaperones; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the thioredoxin family. (139 aa)    
Predicted Functional Partners:
trxB
TrxB; Thioredoxin reductase; Similar to Pantoea sp. At-9b, thioredoxin reductase (NCBI: ZP_05728872.1); COG: Posttranslational modification, protein turnover, chaperones; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
 0.837
rhsD
RhsD; Protein rhsD precursor; Similar to Erwinia tasmaniensis Et1/99, Putative membrane-bound sugar-binding protein (NCBI: YP_001908915.1); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
    
   0.689
groL
GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
 
 0.588
amsI
AmsI; Probable low molecular weight protein-tyrosine-phosphatase AmsI; Similar to Pantoea stewartii subsp. stewartii, CpsI (NCBI: ACO05912.1); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
 
 0.582
yfiP
YfiP; Hypothetical protein YfiP; Similar to Pantoea sp. At-9b, DTW domain containing protein (NCBI: ZP_05727864.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.560
yfiF
YfiF; tRNA/rRNA Methyltransferase; Similar to Pantoea sp. At-9b, tRNA/rRNA methyltransferase (SpoU) (NCBI: ZP_05727862.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.536
gor
Gor; Glutathione reductase; Similar to Pantoea sp. At-9b, glutathione-disulfide reductase (NCBI: ZP_05731841.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
 
 0.530
ahpC
AhpC; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.526
yfiQ
YfiQ; Acetyl-CoA Synthetase; Similar to Pantoea sp. At-9b, GCN5-related N-acetyltransferase (NCBI: ZP_05727866.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Unknown.
 
     0.506
gltA
GltA; Glutamate synthase [NADPH] large chain; Similar to Pantoea sp. At-9b, Glutamate synthase (ferredoxin) (NCBI: ZP_05730857.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
   
 
 0.502
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.