Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PANA_3136Phage Tail Protein; Similar to Salmonella enterica subsp. enterica serovar Typhi str. CT18, putative phage tail protein (NCBI: NP_457169.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown. (100 aa)    
Predicted Functional Partners:
L
L; Head completion/stabilization protein; Similar to Pantoea sp. At-9b, head completion protein (NCBI: ZP_05730494.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
 
    0.974
N
N; Major capsid protein precursor; Similar to Erwinia tasmaniensis Et1/99, Putative major capsid protein (NCBI: YP_001906516.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
 
    0.974
O
O; Presumed capsid scaffolding protein; Similar to Erwinia tasmaniensis Et1/99, Putative capsid scaffolding protein (NCBI: YP_001906515.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
 
    0.974
P
P; Terminase, ATPase subunit; Similar to Erwinia tasmaniensis Et1/99, Terminase, ATPase subunit (NCBI: YP_001906514.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
 
    0.974
M
M; Terminase, endonuclease subunit; Similar to Erwinia tasmaniensis Et1/99, Putative phage terminase (NCBI: YP_001906517.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
 
    0.971
PANA_3159
Capsid Portal Protein; Similar to Erwinia tasmaniensis Et1/99, Probable capsid portal protein (NCBI: YP_001906513.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
 
    0.970
PANA_3133
Phage Tail Protein; Similar to Pantoea sp. At-9b, P2 GpU family protein (NCBI: ZP_05730475.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
 
    0.968
W
W; Baseplate assembly protein W; Similar to Pantoea sp. At-9b, GPW/gp25 family protein (NCBI: ZP_05730484.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
 
    0.960
S
S; Tail completion protein S; Similar to Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884, phage virion morphogenesis protein (NCBI: ZP_06015667.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
 
    0.960
I
I; Tail protein I; Similar to Pantoea sp. At-9b, phage tail protein I (NCBI: ZP_05730482.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
 
    0.950
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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