Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PANA_3166Hypothetical Protein; Similar to Erwinia tasmaniensis Et1/99, Levan regulatory protein RlsC, similar to hypothetical protein (NCBI: YP_001906508.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown. (62 aa)    
Predicted Functional Partners:
A
A; Replication gene A protein; Similar to Salmonella enterica subsp. enterica serovar Typhimurium str. D23580, bacteriophage replication protein (NCBI: CBG26207.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
  
    0.618
dam
Dam; Retron EC67 DNA adenine methylase; Similar to Escherichia coli B str. REL606, retron adenine methylase-like protein (NCBI: YP_003044042.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
  
    0.562
CP84
CP84; Conserved Phage Protein; Similar to Pectobacterium atrosepticum SCRI1043, phage protein (NCBI: YP_050720.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.551
CP80
CP80; Hypothetical 8.5 kDa protein in gpA 5'region; Similar to Pantoea sp. At-9b, transcriptional regulator, TraR/DksA family (NCBI: ZP_05730508.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
  
    0.525
PANA_3171
Hypothetical Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05730509.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
    0.516
PANA_3165
Hypothetical Protein; Similar to Enterobacteria phage PsP3, TumB (NCBI: NP_958095.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.507
tum
Tum; SOS operon TUM protein; Similar to Klebsiella pneumoniae subsp. pneumoniae MGH 78578, putative prophage protein (NCBI: YP_001337130.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
  
    0.475
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.