STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speBSpeB; Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily. (306 aa)    
Predicted Functional Partners:
speA
SpeA; Catalyzes the biosynthesis of agmatine from arginine.
  
 
 0.971
speE
SpeE; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 
 0.956
puuA
PuuA; Gamma-glutamylputrescine synthetase; Similar to Pantoea sp. At-9b, Glutamate--putrescine ligase (NCBI: ZP_05729015.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
  
 0.945
speC
SpeC; Ornithine decarboxylase, constitutive; Similar to Pantoea sp. At-9b, Ornithine decarboxylase (NCBI: ZP_05730237.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
    
 0.921
speG
SpeG; Spermidine N(1)-acetyltransferase; Similar to Pantoea sp. At-9b, GCN5-related N-acetyltransferase (NCBI: ZP_05727844.1); COG: Translation, ribosomal structure and biogenesis; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
     
 0.908
rob
Rob; Right origin-binding protein; Similar to Pantoea sp. At-9b, transcriptional regulator, AraC family (NCBI: ZP_05732510.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
      
 0.765
rob-2
Rob; Right origin-binding protein; Similar to Pantoea sp. At-9b, transcriptional regulator, AraC family (NCBI: ZP_05730268.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
      
 0.765
hutI
HutI; Imidazolonepropionase; Similar to Pantoea sp. At-9b, imidazolonepropionase (NCBI: ZP_05728795.1); COG: Secondary metabolites biosynthesis, transport and catabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
  
 0.640
hutH
HutH; Histidine ammonia-lyase; Similar to Pantoea sp. At-9b, histidine ammonia-lyase (NCBI: ZP_05728791.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
  
 0.632
hutH-2
HutH; Histidine ammonia-lyase; Similar to Pantoea sp. At-9b, histidine ammonia-lyase (NCBI: ZP_05728801.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
  
 0.632
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.