Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
melRMelR; Melibiose operon regulatory protein; Similar to Citrobacter freundii, melibiose operon regulatory protein (NCBI: BAB20427.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown. (311 aa)    
Predicted Functional Partners:
melA
MelA; Alpha-galactosidase; Similar to Citrobacter sp. 30_2, alpha-galactosidase (NCBI: ZP_04558684.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
 
   
 0.745
araC-2
AraC; Arabinose operon regulatory protein; Similar to Pantoea sp. At-9b, transcriptional regulator, AraC family (NCBI: ZP_05727951.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
   
 0.677
melB
MelB; Melibiose carrier protein; Similar to Citrobacter sp. 30_2, melibiose:sodium symporter (NCBI: ZP_04558685.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
     0.671
marA-2
MarA; Multiple antibiotic resistance protein MarA; Similar to Pantoea sp. At-9b, transcriptional regulator, AraC family (NCBI: ZP_05727968.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
     0.594
rhaS
RhaS; HTH-type transcriptional activator RhaS; Similar to Pantoea sp. At-9b, transcriptional regulator, AraC family (NCBI: ZP_05729526.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
 
 0.593
marA
MarA; Multiple antibiotic resistance protein MarA; Similar to Pantoea sp. At-9b, transcriptional regulator, AraC family (NCBI: ZP_05732327.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
   
 0.577
soxS
SoxS; Regulatory protein SoxS; Similar to Pantoea sp. At-9b, transcriptional regulator, AraC family (NCBI: ZP_05731748.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
   
 0.574
yfdX
YfdX; Protein YfdX precursor; Similar to Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480, YfdX protein (NCBI: ZP_02661147.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Extracellular.
  
    0.563
PANA_3304
Hypothetical Protein; Similar to Citrobacter koseri ATCC BAA-895, hypothetical protein CKO_03415 (NCBI: YP_001454934.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.481
ykgD
YkgD; Putative AraC-like transcription regulator; Similar to Burkholderia sp. H160, transcriptional regulator, AraC family (NCBI: ZP_03266216.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.460
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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