STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
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[Homology]
Score
mcpBMcpB; Methyl-accepting chemotaxis protein McpB; Similar to Dickeya dadantii Ech703, methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (NCBI: YP_002988823.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (432 aa)    
Predicted Functional Partners:
cheV
CheV; Chemotaxis protein CheV; Similar to Pantoea sp. At-9b, response regulator receiver modulated CheW protein (NCBI: ZP_05727392.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Unknown.
 
 0.993
cheA
CheA; Chemotaxis protein CheA; Similar to Pantoea sp. At-9b, CheA signal transduction histidine kinase (NCBI: ZP_05728504.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
 0.981
cheW
CheW; Chemotaxis protein CheW; Similar to Pantoea sp. At-9b, CheW protein (NCBI: ZP_05728505.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
 0.965
arcB
ArcB; Aerobic respiration control sensor protein ArcB; Similar to Pantoea sp. At-9b, multi-sensor hybrid histidine kinase (NCBI: ZP_05730859.1); COG: Signal transduction mechanism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.945
cheR
CheR; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
 
 0.933
cheB
CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 0.924
cheY
CheY; Chemotaxis protein CheY; Similar to Pantoea sp. At-9b, response regulator receiver protein (NCBI: ZP_05728511.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
 0.860
barA
BarA; Sensor protein barA; Similar to Pantoea sp. At-9b, Hpt sensor hybrid histidine kinase (NCBI: ZP_05732155.1); COG: Signal transduction mechanism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
 
 0.860
rcsC
RcsC; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.
  
 
 0.812
yddU
YddU; Diguanylate Cyclase/Phosphodiesterase; Similar to Pantoea sp. At-9b, diguanylate cyclase/phosphodiesterase with GAF sensor (NCBI: ZP_05728229.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
 
 0.799
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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