STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimDFimD; Outer membrane usher protein FimD precursor; Similar to Pantoea sp. At-9b, fimbrial biogenesis outer membrane usher protein (NCBI: ZP_05732084.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Outer Membrane. (814 aa)    
Predicted Functional Partners:
sfmC
SfmC; Pili Assembly Chaperone; Similar to Pantoea sp. At-9b, fimbrial chaperone protein-like protein (NCBI: ZP_05732083.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.981
PANA_3331
Hypothetical Protein; Similar to Pantoea sp. At-9b, Spore coat U domain protein (NCBI: ZP_05732082.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Extracellular.
  
 0.970
PANA_3330
Hypothetical Protein; Similar to Pantoea sp. At-9b, Spore coat U domain protein (NCBI: ZP_05732081.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
 0.964
PANA_3334
Type 1 Pili Protein CsuE; Similar to Pantoea sp. At-9b, Spore coat U domain protein (NCBI: ZP_05732085.1); COG: Secondary metabolites biosynthesis, transport and catabolism; Subcellular localization as predicted by Psort 2.0: Extracellular.
 
  
 0.941
yfcS
YfcS; Fimbrial Chaperone; Similar to Providencia rettgeri DSM 1131, hypothetical fimbrial chaperone yfcs (NCBI: ZP_06125306.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Periplasmic.
 
 
 0.691
papD
PapD; Fimbrial Chaperone protein PapD precursor; Similar to Serratia entomophila, SefD (NCBI: NP_938128.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Periplasmic.
 
 
 0.674
smfA-2
SmfA; Major Fimbrial Subunit Protein Precursor; Similar to Serratia entomophila, SefA (NCBI: NP_938125.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Extracellular.
 
 
 0.636
mrkB
MrkB; Fimbrial Chaperone protein MrkB precursor; Similar to Escherichia coli Vir68, hypothetical protein pVir_98 (NCBI: YP_003034073.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Periplasmic.
 
 
 0.624
PANA_4082
Hypothetical Protein; Similar to Burkholderia phymatum STM815, protein of unknown function DUF861 cupin_3 (NCBI: YP_001862648.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.613
smfA
SmfA; Major Fimbrial Subunit Protein Precursor; Similar to Serratia entomophila, SefF (NCBI: NP_938130.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Extracellular.
 
 
 0.612
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.