Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fimDFimD; Outer membrane usher protein FimD precursor; Similar to Pantoea sp. At-9b, fimbrial biogenesis outer membrane usher protein (NCBI: ZP_05732084.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Outer Membrane. (814 aa)    
Predicted Functional Partners:
sfmC
SfmC; Pili Assembly Chaperone; Similar to Pantoea sp. At-9b, fimbrial chaperone protein-like protein (NCBI: ZP_05732083.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.998
PANA_3331
Hypothetical Protein; Similar to Pantoea sp. At-9b, Spore coat U domain protein (NCBI: ZP_05732082.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Extracellular.
 
 0.997
PANA_3330
Hypothetical Protein; Similar to Pantoea sp. At-9b, Spore coat U domain protein (NCBI: ZP_05732081.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.996
PANA_3334
Type 1 Pili Protein CsuE; Similar to Pantoea sp. At-9b, Spore coat U domain protein (NCBI: ZP_05732085.1); COG: Secondary metabolites biosynthesis, transport and catabolism; Subcellular localization as predicted by Psort 2.0: Extracellular.
 
 
 0.994
mrkB
MrkB; Fimbrial Chaperone protein MrkB precursor; Similar to Escherichia coli Vir68, hypothetical protein pVir_98 (NCBI: YP_003034073.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Periplasmic.
 
 0.958
htrE
HtrE; Outer membrane usher protein HtrE precursor; Similar to Escherichia coli Vir68, hypothetical protein pVir_99 (NCBI: YP_003034074.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
  
  
0.910
hifC
HifC; Outer membrane usher protein HifC precursor; Similar to Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, outer membrane fimbrial usher protein (NCBI: YP_151574.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
     
0.902
yfcS
YfcS; Fimbrial Chaperone; Similar to Providencia rettgeri DSM 1131, hypothetical fimbrial chaperone yfcs (NCBI: ZP_06125306.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Periplasmic.
 
 
 0.670
papD
PapD; Fimbrial Chaperone protein PapD precursor; Similar to Serratia entomophila, SefD (NCBI: NP_938128.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Periplasmic.
 
 
 0.653
smfA-2
SmfA; Major Fimbrial Subunit Protein Precursor; Similar to Serratia entomophila, SefA (NCBI: NP_938125.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Extracellular.
 
 
 0.613
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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