STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
csgACsgA; C-factor Protein; Similar to Yersinia mollaretii ATCC 43969, Oxidoreductase, short chain dehydrogenase/reductase family protein (NCBI: ZP_04639093.1); COG: Lipid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Extracellular; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (253 aa)    
Predicted Functional Partners:
nuoC
NuoC; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
   
 
 0.687
ndk
Ndk; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
  
 
 0.634
PANA_3753
Hypothetical Protein; Similar to Enterobacter sp. 638, hypothetical protein Ent638_2114 (NCBI: YP_001176840.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.613
PANA_3754
Hypothetical Protein; Similar to Erwinia tasmaniensis Et1/99, hypothetical protein ETA_25860 (NCBI: YP_001908508.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.613
fruK
FruK; 1-phosphofructokinase; Similar to Pantoea sp. At-9b, 1-phosphofructokinase (NCBI: ZP_05730908.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the carbohydrate kinase PfkB family.
   
    0.525
queH
Hypothetical Protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).
       0.513
gltA
GltA; Glutamate synthase [NADPH] large chain; Similar to Pantoea sp. At-9b, Glutamate synthase (ferredoxin) (NCBI: ZP_05730857.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
   
 0.483
PANA_0646
DUR1,2; Urea amidolyase [Includes: Urea carboxylase]; Similar to Pantoea sp. At-9b, urea carboxylase (NCBI: ZP_05732504.1); COG: Lipid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
 
 0.434
fabD
FabD; Malonyl CoA-acyl carrier protein transacylase; Similar to Pantoea sp. At-9b, malonyl CoA-acyl carrier protein transacylase (NCBI: ZP_05728384.1); COG: Lipid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
 
 0.427
gutM
GutM; Glucitol operon activator protein; Similar to Klebsiella pneumoniae 342, glucitol operon activator protein (NCBI: YP_002236954.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
  
    0.424
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.