Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mntH-2MntH; Probable manganese transport protein MntH; Similar to Serratia odorifera 4Rx13, transporter (NCBI: ZP_06189630.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (337 aa)    
Predicted Functional Partners:
PANA_0646
DUR1,2; Urea amidolyase [Includes: Urea carboxylase]; Similar to Pantoea sp. At-9b, urea carboxylase (NCBI: ZP_05732504.1); COG: Lipid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
  
 0.735
PANA_4072
DUR1,2; Urea amidolyase [Includes: Urea carboxylase]; Similar to Klebsiella variicola At-22, urea carboxylase (NCBI: ZP_06164364.1); COG: Lipid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
  
 0.694
mntR
MntR; Transcriptional regulator MntR; Similar to Pantoea sp. At-9b, transcriptional regulator, MarR family (NCBI: ZP_05728813.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
 
  
 0.551
copA
CopA; Copper-transporting P-type ATPase; Similar to Pantoea sp. At-9b, copper-translocating P-type ATPase (NCBI: ZP_05727537.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
 
 0.407
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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