STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhtC-2RhtC; Threonine efflux protein; Similar to Klebsiella pneumoniae subsp. pneumoniae MGH 78578, amino acid exporter (NCBI: YP_001335673.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (210 aa)    
Predicted Functional Partners:
rhtB
RhtB; Homoserine/homoserine lactone efflux protein; Similar to Erwinia tasmaniensis Et1/99, homoserine/homoserine lactone efflux protein (NCBI: YP_001906178.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
   
 0.777
yahN-2
YahN; Lysine Exporter Protein; Similar to Erwinia pyrifoliae Ep1/96, Lysine exporter protein (LYSE/YGGA) (NCBI: YP_002648446.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
    0.763
rhtC-3
RhtC; Threonine Efflux Protein; Similar to Erwinia tasmaniensis Et1/99, Lysine exporter protein (NCBI: YP_001907322.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.617
ycnD
YcnD; Nitroreductase; Similar to Pectobacterium wasabiae WPP163, nitroreductase (NCBI: YP_003257831.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.537
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.