Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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ycnDYcnD; Nitroreductase; Similar to Pectobacterium wasabiae WPP163, nitroreductase (NCBI: YP_003257831.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Unknown. (312 aa)    
Predicted Functional Partners:
ribF
RibF; Riboflavin biosynthesis protein ribF [Includes: Riboflavin kinase]; Similar to Pantoea sp. At-9b, riboflavin biosynthesis protein RibF (NCBI: ZP_05729742.1); COG: Translation, ribosomal structure and biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown.
    
 0.909
ssuE
SsuE; FMN reductase; Similar to Pantoea sp. At-9b, FMN reductase (NCBI: ZP_05728912.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
     
 0.904
agp
Agp; Glucose-1-phosphatase precursor; Similar to Klebsiella pneumoniae 342, histidine acid phosphatase family protein (NCBI: YP_002239752.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Periplasmic.
    
  0.901
yigB
YigB; Hydrolase; Similar to Pantoea sp. At-9b, HAD-superfamily hydrolase, subfamily IA, variant 1 (NCBI: ZP_05730681.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
     
  0.900
ybjI
YbjI; Phosphatase ybjI; Similar to Pantoea sp. At-9b, Cof-like hydrolase (NCBI: ZP_05727584.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
     
  0.900
pad1
Pad1; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase.
     
  0.900
ubiX
UbiX; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
     
  0.900
yadH
YadH; Inner membrane transport permease YadH; Similar to Pantoea sp. At-9b, ABC-2 type transporter (NCBI: ZP_05729841.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
  
 0.589
birA
BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
    0.565
ybjC
YbjC; Hypothetical Protein YbjC; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05728844.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
  
 0.560
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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