Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
PANA_4166Hypothetical Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05727002.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown. (183 aa)    
Predicted Functional Partners:
PANA_4167
Cytoplasmic Protein; Similar to Proteus penneri ATCC 35198, hypothetical protein PROPEN_04575 (NCBI: ZP_03806173.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.773
PANA_1169
Hypothetical Protein; Similar to Yersinia bercovieri ATCC 43970, acetyltransferase (NCBI: ZP_04628864.1); COG: Translation, ribosomal structure and biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.618
rbtT
RbtT; Ribitol transporter; Similar to Providencia rettgeri DSM 1131, major facilitator superfamily MFS_1 (NCBI: ZP_06126756.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.566
dsbB
DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.
  
 
 0.523
virA
VirA; Wide host range VirA protein; Similar to Pantoea sp. At-9b, PAS/PAC sensor hybrid histidine kinase (NCBI: ZP_05732499.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.497
PANA_3892
WalW Protein; Similar to Erwinia pyrifoliae Ep1/96, Lipopolysaccharide biosynthesis protein (NCBI: YP_002647126.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.436
PANA_4104
Hypothetical Protein; Similar to Pantoea sp. At-9b, hypothetical protein Pat9bDRAFT_4569 (NCBI: ZP_05731252.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.415
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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