STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFW25261.1Transcriptional regulator, Fur family; Psort location: Cytoplasmic, score: 7.50; Belongs to the Fur family. (144 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.896
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.870
EFW24763.1
Rubrerythrin; KEGG: cpr:CPR_0938 1.9e-63 periplasmic [Fe] hydrogenase 1 K00532; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.860
EFW25260.1
Rubrerythrin; KEGG: cpr:CPR_0938 5.8e-53 periplasmic [Fe] hydrogenase 1 K00532; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.859
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.848
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
   0.845
trxA
Thioredoxin; KEGG: sis:LS215_0050 5.1e-22 thioredoxin K03671; Psort location: Cytoplasmic, score: 9.97; Belongs to the thioredoxin family.
  
 
 0.786
EFW24328.1
Antioxidant, AhpC/TSA family; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.754
EFW24436.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: cch:Cag_0580 9.0e-72 putative NADPH-dependent glutamate synthase small subunit K00266; Psort location: Cytoplasmic, score: 9.97.
    
 0.667
EFW25355.1
KEGG: mla:Mlab_0300 0. carbamoyl-phosphate synthase, large subunit; K01952 phosphoribosylformylglycinamidine synthase; Psort location: Cytoplasmic, score: 9.97.
    
 0.654
Your Current Organism:
Solobacterium moorei
NCBI taxonomy Id: 706433
Other names: S. moorei F0204, Solobacterium moorei F0204, Solobacterium moorei str. F0204, Solobacterium moorei strain F0204
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