STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFW25212.1Polysaccharide deacetylase. (485 aa)    
Predicted Functional Partners:
EFW24591.1
Glycosyltransferase, group 2 family protein; KEGG: mmy:MSC_0108 8.1e-63 epsG; glycosyltransferase K00786; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.899
prkC
Serine/threonine-protein kinase PrkC; KEGG: ssa:SSA_1845 1.5e-95 pkn; serine/threonine protein kinase, putative K08884; Psort location: CytoplasmicMembrane, score: 9.96.
 
 
 0.653
msrB
methionine-R-sulfoxide reductase.
  
  
 0.640
EFW24925.1
Amidohydrolase family protein; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
    
  0.558
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
  
  
 0.557
EFW23743.1
KEGG: cbe:Cbei_4669 5.8e-140 glycoside hydrolase family protein; K01223 6-phospho-beta-glucosidase; Psort location: Cytoplasmic, score: 9.97; Belongs to the glycosyl hydrolase 1 family.
    
 0.554
EFW23744.1
Glycosyl hydrolase, family 1; KEGG: cdf:CD3096 7.6e-138 ascB1; 6-phospho-beta-glucosidase K01223; Psort location: Cytoplasmic, score: 9.97; Belongs to the glycosyl hydrolase 1 family.
    
 0.554
EFW25213.1
Hypothetical protein.
       0.541
EFW23581.1
Cell envelope-like function transcriptional attenuator common domain protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.527
murG
Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
    
 0.521
Your Current Organism:
Solobacterium moorei
NCBI taxonomy Id: 706433
Other names: S. moorei F0204, Solobacterium moorei F0204, Solobacterium moorei str. F0204, Solobacterium moorei strain F0204
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