STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFW24361.1Relaxase/mobilization nuclease domain protein; KEGG: edi:EDI_282700 1.6e-05 structural maintenance of chromosomes protein K06669; Psort location: Cytoplasmic, score: 7.50. (443 aa)    
Predicted Functional Partners:
EFW24360.1
Hypothetical protein; KEGG: edi:EDI_077810 0.0068 alpha-actinin; Psort location: Cytoplasmic, score: 7.50.
    0.953
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.849
EFW25256.1
Putative ATP-dependent nuclease subunit A; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddA nuclease domain is required for chi fragment generation; this subunit has the helicase and 3' -> 5' nuclease activities; Belongs to the helicase family. AddA subfamily.
  
 
 0.843
EFW24370.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 8.16.
 
   
 0.762
EFW24132.1
UvrD/REP helicase; KEGG: sac:SACOL1966 3.4e-142 pcrA; ATP-dependent DNA helicase PcrA K03657; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.756
EFW24122.1
Hypothetical protein; KEGG: edi:EDI_119900 1.1e-07 DNA double-strand break repair Rad50 ATPase K10866; Psort location: Cytoplasmic, score: 7.50.
 
     0.728
EFW24353.1
Hypothetical protein; KEGG: ctc:CTC01788 0.0011 RNA polymerase factor sigma-70 K03088; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.706
EFW24461.1
Hypothetical protein; KEGG: ctc:CTC00579 1.7e-94 sbcC; exonuclease SbcC K03546; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.683
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
 
  0.662
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
 
 0.648
Your Current Organism:
Solobacterium moorei
NCBI taxonomy Id: 706433
Other names: S. moorei F0204, Solobacterium moorei F0204, Solobacterium moorei str. F0204, Solobacterium moorei strain F0204
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.