STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFW24127.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (235 aa)    
Predicted Functional Partners:
rumA-2
KEGG: spx:SPG_0953 2.7e-119 23S rRNA (uracil-5-)-methyltransferase RumA; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.697
gatB
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
       0.665
EFW24129.1
Putative aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit; KEGG: mmy:MSC_0762 7.9e-88 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433; Psort location: Cytoplasmic, score: 9.97; Belongs to the amidase family.
       0.665
gatC
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
       0.665
EFW24125.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.623
ligA
NAD-dependent DNA ligase OB-fold domain protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.542
EFW24132.1
UvrD/REP helicase; KEGG: sac:SACOL1966 3.4e-142 pcrA; ATP-dependent DNA helicase PcrA K03657; Psort location: Cytoplasmic, score: 9.97.
       0.542
EFW24121.1
TraG family protein; Psort location: Cytoplasmic, score: 7.50.
       0.491
EFW24122.1
Hypothetical protein; KEGG: edi:EDI_119900 1.1e-07 DNA double-strand break repair Rad50 ATPase K10866; Psort location: Cytoplasmic, score: 7.50.
       0.491
EFW24123.1
Hypothetical protein; KEGG: spi:MGAS10750_Spy1680 2.2e-76 hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.491
Your Current Organism:
Solobacterium moorei
NCBI taxonomy Id: 706433
Other names: S. moorei F0204, Solobacterium moorei F0204, Solobacterium moorei str. F0204, Solobacterium moorei strain F0204
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.