STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alrAlanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (372 aa)    
Predicted Functional Partners:
EFW24782.1
Mur ligase middle domain protein; KEGG: tte:TTE2546 2.0e-82 murF; UDP-N-acetylmuramyl pentapeptide synthase; K01929 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase; Psort location: Cytoplasmic, score: 8.03.
  
 0.973
ddl
D-ala D-ala ligase N-terminal domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.972
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.823
EFW23574.1
AMP-binding enzyme; KEGG: ere:EUBREC_2666 4.1e-91 putative amino acid activating enzyme; K03367 D-alanine-poly(phosphoribitol) ligase; Psort location: Cytoplasmic, score: 9.97; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.815
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
 
  
 0.807
pbpB
Penicillin-binding protein 2B; KEGG: bpu:BPUM_1409 3.0e-104 ftsI; peptidoglycan glycosyltransferase K08724; Psort location: CytoplasmicMembrane, score: 8.78.
 
  
 0.798
EFW24222.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.785
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
  
 0.782
EFW25056.1
Hydrolase, P-loop family.
  
 
 0.781
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
 
  
 0.780
Your Current Organism:
Solobacterium moorei
NCBI taxonomy Id: 706433
Other names: S. moorei F0204, Solobacterium moorei F0204, Solobacterium moorei str. F0204, Solobacterium moorei strain F0204
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