STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFW23994.1KEGG: lsl:LSL_0676 2.4e-38 HAD superfamily hydrolase; K01560 2-haloacid dehalogenase; Psort location: Cytoplasmic, score: 7.50. (230 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
    
  0.843
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
 
  0.789
EFW23883.1
Inosine 5-monophosphate dehydrogenase; KEGG: ccu:Ccur_01810 2.0e-201 IMP dehydrogenase/GMP reductase; K00088 IMP dehydrogenase; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.787
EFW23996.1
Hydrolase, HD family; KEGG: mfl:Mfl373 5.0e-18 nadD; putative nicotinate-nucleotide adenylyltransferase K00969; Psort location: Cytoplasmic, score: 7.50.
    
 0.759
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.758
EFW23993.1
DnaD domain protein; Psort location: Cytoplasmic, score: 7.50.
       0.757
EFW23991.1
EDD domain protein, DegV family; Psort location: Cytoplasmic, score: 7.50.
       0.654
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
       0.603
EFW23997.1
RNA-binding protein, YhbY family; Psort location: Cytoplasmic, score: 7.50.
       0.601
yqeH
Ribosome biogenesis GTPase YqeH; KEGG: esi:Exig_0764 1.2e-59 GTP-binding protein YqeH; Psort location: Cytoplasmic, score: 7.50.
       0.601
Your Current Organism:
Solobacterium moorei
NCBI taxonomy Id: 706433
Other names: S. moorei F0204, Solobacterium moorei F0204, Solobacterium moorei str. F0204, Solobacterium moorei strain F0204
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