STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFW24084.1Putative membrane protein; Psort location: CytoplasmicMembrane, score: 10.00. (304 aa)    
Predicted Functional Partners:
EFW24086.1
Cation diffusion facilitator family transporter; KEGG: msi:Msm_0789 2.1e-39 cation efflux system protein (zinc/cadmium/cobalt); Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
     
 0.785
EFW24085.1
Ser/Thr phosphatase family protein; KEGG: bcl:ABC2957 3.7e-42 5'-nucleotidase K01081; Psort location: Cellwall, score: 8.97; Belongs to the 5'-nucleotidase family.
       0.773
EFW24087.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.705
pheT
KEGG: gwc:GWCH70_2648 1.4e-143 phenylalanyl-tRNA synthetase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
  
   0.610
cobB
Transcriptional regulator, Sir2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
    0.553
EFW23643.1
KEGG: fnu:FN1237 7.0e-64 choline kinase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.515
EFW24088.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.508
uppS
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
 
 0.506
EFW23878.1
Polyprenyl synthetase; KEGG: afl:Aflv_0947 5.4e-57 geranylgeranyl pyrophosphate synthase; K00795 geranyltranstransferase; Psort location: Cytoplasmic, score: 9.97; Belongs to the FPP/GGPP synthase family.
    
 0.477
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
   
 
 0.462
Your Current Organism:
Solobacterium moorei
NCBI taxonomy Id: 706433
Other names: S. moorei F0204, Solobacterium moorei F0204, Solobacterium moorei str. F0204, Solobacterium moorei strain F0204
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