STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rumA-3KEGG: bcx:BCA_0507 3.9e-70 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (434 aa)    
Predicted Functional Partners:
EFW24101.1
KEGG: gwc:GWCH70_0522 3.1e-38 pseudouridine synthase, RluA family K06180; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.794
EFW24341.1
Hypothetical protein; KEGG: spb:M28_Spy1090 4.6e-11 tRNA (uracil-5-)-methyltransferase K00599; Psort location: Cytoplasmic, score: 7.50.
 
      0.709
EFW24646.1
Hypothetical protein; KEGG: spp:SPP_1034 3.3e-26 rumA1; 23S rRNA (uracil-5-)-methyltransferase RumA; Psort location: Cytoplasmic, score: 7.50.
 
      0.542
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
  
 0.527
EFW24099.1
Basic membrane protein.
       0.484
EFW23829.1
NOL1/NOP2/sun family protein; KEGG: bbe:BBR47_43550 1.1e-74 probable ribosomal RNA small subunit methyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.440
Your Current Organism:
Solobacterium moorei
NCBI taxonomy Id: 706433
Other names: S. moorei F0204, Solobacterium moorei F0204, Solobacterium moorei str. F0204, Solobacterium moorei strain F0204
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.