STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFW23778.1Transcriptional regulator, AraC family; KEGG: bay:RBAM_037970 4.2e-11 adaA; AdaA K10778. (117 aa)    
Predicted Functional Partners:
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 7.50.
    
 0.902
EFW24329.1
KEGG: bcz:BCZK3497 7.2e-10 adaA; AraC family transcriptional regulator K10778; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.832
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.783
EFW25304.1
Transcriptional regulator, AraC family; KEGG: llm:llmg_0499 1.7e-07 adaA; methylphosphotriester-DNA alkyltransferase K10778; Psort location: Cytoplasmic, score: 7.50.
  
     0.773
EFW25404.1
KEGG: bcz:BCZK3497 8.4e-11 adaA; AraC family transcriptional regulator K10778; Psort location: Cytoplasmic, score: 7.50.
  
     0.769
EFW25366.1
Transcriptional regulator, AraC family; KEGG: llm:llmg_0499 9.1e-08 adaA; methylphosphotriester-DNA alkyltransferase K10778; Psort location: Cytoplasmic, score: 7.50.
  
     0.724
EFW25135.1
KEGG: bcz:BCZK3497 1.7e-10 adaA; AraC family transcriptional regulator K10778; Psort location: Cytoplasmic, score: 7.50.
  
     0.711
EFW23779.1
Hypothetical protein; KEGG: cpy:Cphy_1147 1.2e-34 L-rhamnose isomerase K01813; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.597
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.594
EFW23438.1
Hypothetical protein; KEGG: cbe:Cbei_3047 2.4e-05 xylan 1,4-beta-xylosidase; Psort location: Cytoplasmic, score: 7.50.
 
 0.591
Your Current Organism:
Solobacterium moorei
NCBI taxonomy Id: 706433
Other names: S. moorei F0204, Solobacterium moorei F0204, Solobacterium moorei str. F0204, Solobacterium moorei strain F0204
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