STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFW23550.1Hypothetical protein; KEGG: lba:Lebu_0869 7.5e-28 histidinol phosphate phosphatase HisJ family; K04486 histidinol-phosphatase (PHP family); Psort location: Cytoplasmic, score: 7.50; Belongs to the PHP hydrolase family. HisK subfamily. (218 aa)    
Predicted Functional Partners:
EFW24929.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.624
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
      0.591
EFW24675.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
  
  0.585
EFW24912.1
Bacterial type II secretion system domain protein F; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.564
EFW24502.1
Transposase, IS116/IS110/IS902 family; Psort location: Cytoplasmic, score: 7.50.
  
  
  0.562
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
  
 0.538
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
    0.502
EFW23426.1
TldD/PmbA family protein; Psort location: Cytoplasmic, score: 7.50; overlaps another CDS with the same product name.
 
     0.499
ruvA
Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
    
 0.495
EFW24784.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bld:BLi03483 6.1e-49 cssS; CssS; K07650 two-component system, OmpR family, sensor histidine kinase CssS; Psort location: CytoplasmicMembrane, score: 9.81.
 
     0.470
Your Current Organism:
Solobacterium moorei
NCBI taxonomy Id: 706433
Other names: S. moorei F0204, Solobacterium moorei F0204, Solobacterium moorei str. F0204, Solobacterium moorei strain F0204
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.