STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHO66663.1Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (586 aa)    
Predicted Functional Partners:
KHO66662.1
Phage capsid scaffolding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.989
KHO66660.1
Terminase endonuclease subunit; gpM; M protein; capsid packaging; M protein is probably the endonuclease subunit of the terminase complex, which directs cos cleavage of closed monomeric dsDNA circles into linear genomes with 19 nt cohesive ssDNA ends; Q, P and M proteins are needed to package DNA into capsid proheads and conversion into mature capsids; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.988
KHO66661.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.988
KHO66658.1
Tail protein X; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.985
KHO66659.1
Head completion/stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.985
KHO66655.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.983
KHO66654.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.982
KHO66648.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.978
KHO66645.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.976
KHO66656.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.925
Your Current Organism:
Pseudomonas flexibilis
NCBI taxonomy Id: 706570
Other names: ATCC 29606, JCM 14085 [[Pseudomonas tuomuerensis]], LMG 29034, LMG:29034, P. flexibilis, Pseudomonas tuomuerensis, Pseudomonas tuomuerensis Xin et al. 2009, Serpens flexibilis, strain 78-123 [[Pseudomonas tuomuerensis]]
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.