Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AFM22849.1Poly(3-hydroxyalkanoate) synthetase; PFAM: Protein of unknown function (DUF3141). (367 aa)    
Predicted Functional Partners:
AFM27206.1
PFAM: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E); TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit.
 
  
 0.974
AFM27207.1
poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; PFAM: Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; alpha/beta hydrolase fold; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit.
  
  
 
0.928
AFM22848.1
Hypothetical protein.
       0.576
AFM27801.1
Phosphotransacetylase; PFAM: MaoC like domain; Phosphate acetyl/butaryl transferase.
 
  
 0.528
AFM25213.1
Phosphotransacetylase; PFAM: Phosphate acetyl/butaryl transferase.
  
  
 0.415
AFM24222.1
Polyketide synthase family protein; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; 4'-phosphopantetheinyl transferase superfamily; 2-nitropropane dioxygenase; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: phosphopantetheine--protein transferase domain.
  
  
 0.410
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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